Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs186365795 chr4:70288700 G/A 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs186455826 chr21:45581649 G/A 0.000116 118 38.58 51.23 28.43 KM Plot
THYM rs1869425 chr2:30834916 A/G 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs1869426 chr2:30834669 G/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs1876719 chr8:50072498 G/A 2.76E-10 118 46.43 50.1 25.83 KM Plot
THYM rs1876882 chr8:131745564 C/T 0 119 2.9 26.57 44.38 KM Plot
THYM rs1877320 chr4:187131279 G/A 1.1E-8 119 12.63 36.63 42.82 KM Plot
THYM rs1877617 chr1:227352930 C/T 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs1880539 chr2:30732479 C/A 1.4E-8 118 37.37 50.1 33.13 KM Plot
THYM rs1880541 chr2:30783847 G/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs1881249 chr7:29685928 G/A 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs1888003 chr13:111019865 A/G 0.000165 117 55.1 44.5 38.23 KM Plot
THYM rs1892844 chr22:17155383 A/G 2.56E-5 114 40.67 39.65 32.33 KM Plot
THYM rs189919 chr16:24737741 G/A 2.3E-9 116 12.63 28 46.27 KM Plot
THYM rs190183466 chr4:70261102 A/G 4.8E-13 119 41.22 42.3 6 KM Plot